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Version:
2.1 ▾
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import networkx as nx
from nose.tools import *
from networkx.algorithms.bipartite.cluster import cc_dot, cc_min, cc_max
import networkx.algorithms.bipartite as bipartite
def test_pairwise_bipartite_cc_functions():
# Test functions for different kinds of bipartite clustering coefficients
# between pairs of nodes using 3 example graphs from figure 5 p. 40
# Latapy et al (2008)
G1 = nx.Graph([(0, 2), (0, 3), (0, 4), (0, 5), (0, 6), (1, 5), (1, 6), (1, 7)])
G2 = nx.Graph([(0, 2), (0, 3), (0, 4), (1, 3), (1, 4), (1, 5)])
G3 = nx.Graph([(0, 2), (0, 3), (0, 4), (0, 5), (0, 6), (1, 5), (1, 6), (1, 7), (1, 8), (1, 9)])
result = {0: [1 / 3.0, 2 / 3.0, 2 / 5.0],
1: [1 / 2.0, 2 / 3.0, 2 / 3.0],
2: [2 / 8.0, 2 / 5.0, 2 / 5.0]}
for i, G in enumerate([G1, G2, G3]):
assert(bipartite.is_bipartite(G))
assert(cc_dot(set(G[0]), set(G[1])) == result[i][0])
assert(cc_min(set(G[0]), set(G[1])) == result[i][1])
assert(cc_max(set(G[0]), set(G[1])) == result[i][2])
def test_star_graph():
G = nx.star_graph(3)
# all modes are the same
answer = {0: 0, 1: 1, 2: 1, 3: 1}
assert_equal(bipartite.clustering(G, mode='dot'), answer)
assert_equal(bipartite.clustering(G, mode='min'), answer)
assert_equal(bipartite.clustering(G, mode='max'), answer)
@raises(nx.NetworkXError)
def test_not_bipartite():
bipartite.clustering(nx.complete_graph(4))
@raises(nx.NetworkXError)
def test_bad_mode():
bipartite.clustering(nx.path_graph(4), mode='foo')
def test_path_graph():
G = nx.path_graph(4)
answer = {0: 0.5, 1: 0.5, 2: 0.5, 3: 0.5}
assert_equal(bipartite.clustering(G, mode='dot'), answer)
assert_equal(bipartite.clustering(G, mode='max'), answer)
answer = {0: 1, 1: 1, 2: 1, 3: 1}
assert_equal(bipartite.clustering(G, mode='min'), answer)
def test_average_path_graph():
G = nx.path_graph(4)
assert_equal(bipartite.average_clustering(G, mode='dot'), 0.5)
assert_equal(bipartite.average_clustering(G, mode='max'), 0.5)
assert_equal(bipartite.average_clustering(G, mode='min'), 1)
def test_ra_clustering_davis():
G = nx.davis_southern_women_graph()
cc4 = round(bipartite.robins_alexander_clustering(G), 3)
assert_equal(cc4, 0.468)
def test_ra_clustering_square():
G = nx.path_graph(4)
G.add_edge(0, 3)
assert_equal(bipartite.robins_alexander_clustering(G), 1.0)
def test_ra_clustering_zero():
G = nx.Graph()
assert_equal(bipartite.robins_alexander_clustering(G), 0)
G.add_nodes_from(range(4))
assert_equal(bipartite.robins_alexander_clustering(G), 0)
G.add_edges_from([(0, 1), (2, 3), (3, 4)])
assert_equal(bipartite.robins_alexander_clustering(G), 0)
G.add_edge(1, 2)
assert_equal(bipartite.robins_alexander_clustering(G), 0)