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#!/usr/bin/env python
"""Original NetworkX graph tests"""
from nose.tools import *
import networkx as nx
from networkx import convert_node_labels_to_integers as cnlti
from networkx.testing import *
class HistoricalTests(object):
def setUp(self):
self.null = nx.null_graph()
self.P1 = cnlti(nx.path_graph(1), first_label=1)
self.P3 = cnlti(nx.path_graph(3), first_label=1)
self.P10 = cnlti(nx.path_graph(10), first_label=1)
self.K1 = cnlti(nx.complete_graph(1), first_label=1)
self.K3 = cnlti(nx.complete_graph(3), first_label=1)
self.K4 = cnlti(nx.complete_graph(4), first_label=1)
self.K5 = cnlti(nx.complete_graph(5), first_label=1)
self.K10 = cnlti(nx.complete_graph(10), first_label=1)
self.G = nx.Graph
def test_name(self):
G = self.G(name="test")
assert_equal(str(G), 'test')
assert_equal(G.name, 'test')
H = self.G()
assert_equal(H.name, '')
# Nodes
def test_add_remove_node(self):
G = self.G()
G.add_node('A')
assert_true(G.has_node('A'))
G.remove_node('A')
assert_false(G.has_node('A'))
def test_nonhashable_node(self):
# Test if a non-hashable object is in the Graph. A python dict will
# raise a TypeError, but for a Graph class a simple False should be
# returned (see Graph __contains__). If it cannot be a node then it is
# not a node.
G = self.G()
assert_false(G.has_node(['A']))
assert_false(G.has_node({'A': 1}))
def test_add_nodes_from(self):
G = self.G()
G.add_nodes_from(list("ABCDEFGHIJKL"))
assert_true(G.has_node("L"))
G.remove_nodes_from(['H', 'I', 'J', 'K', 'L'])
G.add_nodes_from([1, 2, 3, 4])
assert_equal(sorted(G.nodes(), key=str),
[1, 2, 3, 4, 'A', 'B', 'C', 'D', 'E', 'F', 'G'])
# test __iter__
assert_equal(sorted(G, key=str),
[1, 2, 3, 4, 'A', 'B', 'C', 'D', 'E', 'F', 'G'])
def test_contains(self):
G = self.G()
G.add_node('A')
assert_true('A' in G)
assert_false([] in G) # never raise a Key or TypeError in this test
assert_false({1: 1} in G)
def test_add_remove(self):
# Test add_node and remove_node acting for various nbunch
G = self.G()
G.add_node('m')
assert_true(G.has_node('m'))
G.add_node('m') # no complaints
assert_raises(nx.NetworkXError, G.remove_node, 'j')
G.remove_node('m')
assert_equal(list(G), [])
def test_nbunch_is_list(self):
G = self.G()
G.add_nodes_from(list("ABCD"))
G.add_nodes_from(self.P3) # add nbunch of nodes (nbunch=Graph)
assert_equal(sorted(G.nodes(), key=str),
[1, 2, 3, 'A', 'B', 'C', 'D'])
G.remove_nodes_from(self.P3) # remove nbunch of nodes (nbunch=Graph)
assert_equal(sorted(G.nodes(), key=str),
['A', 'B', 'C', 'D'])
def test_nbunch_is_set(self):
G = self.G()
nbunch = set("ABCDEFGHIJKL")
G.add_nodes_from(nbunch)
assert_true(G.has_node("L"))
def test_nbunch_dict(self):
# nbunch is a dict with nodes as keys
G = self.G()
nbunch = set("ABCDEFGHIJKL")
G.add_nodes_from(nbunch)
nbunch = {'I': "foo", 'J': 2, 'K': True, 'L': "spam"}
G.remove_nodes_from(nbunch)
assert_true(sorted(G.nodes(), key=str),
['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H'])
def test_nbunch_iterator(self):
G = self.G()
G.add_nodes_from(['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H'])
n_iter = self.P3.nodes()
G.add_nodes_from(n_iter)
assert_equal(sorted(G.nodes(), key=str),
[1, 2, 3, 'A', 'B', 'C', 'D', 'E', 'F', 'G', 'H'])
n_iter = self.P3.nodes() # rebuild same iterator
G.remove_nodes_from(n_iter) # remove nbunch of nodes (nbunch=iterator)
assert_equal(sorted(G.nodes(), key=str),
['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H'])
def test_nbunch_graph(self):
G = self.G()
G.add_nodes_from(['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H'])
nbunch = self.K3
G.add_nodes_from(nbunch)
assert_true(sorted(G.nodes(), key=str),
[1, 2, 3, 'A', 'B', 'C', 'D', 'E', 'F', 'G', 'H'])
# Edges
def test_add_edge(self):
G = self.G()
assert_raises(TypeError, G.add_edge, 'A')
G.add_edge('A', 'B') # testing add_edge()
G.add_edge('A', 'B') # should fail silently
assert_true(G.has_edge('A', 'B'))
assert_false(G.has_edge('A', 'C'))
assert_true(G.has_edge(*('A', 'B')))
if G.is_directed():
assert_false(G.has_edge('B', 'A'))
else:
# G is undirected, so B->A is an edge
assert_true(G.has_edge('B', 'A'))
G.add_edge('A', 'C') # test directedness
G.add_edge('C', 'A')
G.remove_edge('C', 'A')
if G.is_directed():
assert_true(G.has_edge('A', 'C'))
else:
assert_false(G.has_edge('A', 'C'))
assert_false(G.has_edge('C', 'A'))
def test_self_loop(self):
G = self.G()
G.add_edge('A', 'A') # test self loops
assert_true(G.has_edge('A', 'A'))
G.remove_edge('A', 'A')
G.add_edge('X', 'X')
assert_true(G.has_node('X'))
G.remove_node('X')
G.add_edge('A', 'Z') # should add the node silently
assert_true(G.has_node('Z'))
def test_add_edges_from(self):
G = self.G()
G.add_edges_from([('B', 'C')]) # test add_edges_from()
assert_true(G.has_edge('B', 'C'))
if G.is_directed():
assert_false(G.has_edge('C', 'B'))
else:
assert_true(G.has_edge('C', 'B')) # undirected
G.add_edges_from([('D', 'F'), ('B', 'D')])
assert_true(G.has_edge('D', 'F'))
assert_true(G.has_edge('B', 'D'))
if G.is_directed():
assert_false(G.has_edge('D', 'B'))
else:
assert_true(G.has_edge('D', 'B')) # undirected
def test_add_edges_from2(self):
G = self.G()
# after failing silently, should add 2nd edge
G.add_edges_from([tuple('IJ'), list('KK'), tuple('JK')])
assert_true(G.has_edge(*('I', 'J')))
assert_true(G.has_edge(*('K', 'K')))
assert_true(G.has_edge(*('J', 'K')))
if G.is_directed():
assert_false(G.has_edge(*('K', 'J')))
else:
assert_true(G.has_edge(*('K', 'J')))
def test_add_edges_from3(self):
G = self.G()
G.add_edges_from(zip(list('ACD'), list('CDE')))
assert_true(G.has_edge('D', 'E'))
assert_false(G.has_edge('E', 'C'))
def test_remove_edge(self):
G = self.G()
G.add_nodes_from([1, 2, 3, 'A', 'B', 'C', 'D', 'E', 'F', 'G', 'H'])
G.add_edges_from(zip(list('MNOP'), list('NOPM')))
assert_true(G.has_edge('O', 'P'))
assert_true(G.has_edge('P', 'M'))
G.remove_node('P') # tests remove_node()'s handling of edges.
assert_false(G.has_edge('P', 'M'))
assert_raises(TypeError, G.remove_edge, 'M')
G.add_edge('N', 'M')
assert_true(G.has_edge('M', 'N'))
G.remove_edge('M', 'N')
assert_false(G.has_edge('M', 'N'))
# self loop fails silently
G.remove_edges_from([list('HI'), list('DF'),
tuple('KK'), tuple('JK')])
assert_false(G.has_edge('H', 'I'))
assert_false(G.has_edge('J', 'K'))
G.remove_edges_from([list('IJ'), list('KK'), list('JK')])
assert_false(G.has_edge('I', 'J'))
G.remove_nodes_from(set('ZEFHIMNO'))
G.add_edge('J', 'K')
def test_edges_nbunch(self):
# Test G.edges(nbunch) with various forms of nbunch
G = self.G()
G.add_edges_from([('A', 'B'), ('A', 'C'), ('B', 'D'),
('C', 'B'), ('C', 'D')])
# node not in nbunch should be quietly ignored
assert_raises(nx.NetworkXError, G.edges, 6)
assert_equals(G.edges('Z'), []) # iterable non-node
# nbunch can be an empty list
assert_equals(G.edges([]), [])
if G.is_directed():
elist = [('A', 'B'), ('A', 'C'), ('B', 'D')]
else:
elist = [('A', 'B'), ('A', 'C'), ('B', 'C'), ('B', 'D')]
# nbunch can be a list
assert_edges_equal(G.edges(['A', 'B']), elist)
# nbunch can be a set
assert_edges_equal(G.edges(set(['A', 'B'])), elist)
# nbunch can be a graph
G1 = self.G()
G1.add_nodes_from('AB')
assert_edges_equal(G.edges(G1), elist)
# nbunch can be a dict with nodes as keys
ndict = {'A': "thing1", 'B': "thing2"}
assert_edges_equal(G.edges(ndict), elist)
# nbunch can be a single node
assert_edges_equal(G.edges('A'), [('A', 'B'), ('A', 'C')])
assert_nodes_equal(sorted(G), ['A', 'B', 'C', 'D'])
def test_edges_nbunch(self):
G = self.G()
G.add_edges_from([('A', 'B'), ('A', 'C'), ('B', 'D'),
('C', 'B'), ('C', 'D')])
# Test G.edges(nbunch) with various forms of nbunch
# node not in nbunch should be quietly ignored
assert_equals(list(G.edges('Z')), [])
# nbunch can be an empty list
assert_equals(sorted(G.edges([])), [])
if G.is_directed():
elist = [('A', 'B'), ('A', 'C'), ('B', 'D')]
else:
elist = [('A', 'B'), ('A', 'C'), ('B', 'C'), ('B', 'D')]
# nbunch can be a list
assert_edges_equal(G.edges(['A', 'B']), elist)
# nbunch can be a set
assert_edges_equal(G.edges(set(['A', 'B'])), elist)
# nbunch can be a graph
G1 = self.G()
G1.add_nodes_from(['A', 'B'])
assert_edges_equal(G.edges(G1), elist)
# nbunch can be a dict with nodes as keys
ndict = {'A': "thing1", 'B': "thing2"}
assert_edges_equal(G.edges(ndict), elist)
# nbunch can be a single node
assert_edges_equal(G.edges('A'), [('A', 'B'), ('A', 'C')])
# nbunch can be nothing (whole graph)
assert_edges_equal(G.edges(), [('A', 'B'), ('A', 'C'), ('B', 'D'),
('C', 'B'), ('C', 'D')])
def test_degree(self):
G = self.G()
G.add_edges_from([('A', 'B'), ('A', 'C'), ('B', 'D'),
('C', 'B'), ('C', 'D')])
assert_equal(G.degree('A'), 2)
# degree of single node in iterable container must return dict
assert_equal(list(G.degree(['A'])), [('A', 2)])
assert_equal(sorted(d for n, d in G.degree(['A', 'B'])), [2, 3])
assert_equal(sorted(d for n, d in G.degree()), [2, 2, 3, 3])
def test_degree2(self):
H = self.G()
H.add_edges_from([(1, 24), (1, 2)])
assert_equal(sorted(d for n, d in H.degree([1, 24])), [1, 2])
def test_degree_graph(self):
P3 = nx.path_graph(3)
P5 = nx.path_graph(5)
# silently ignore nodes not in P3
assert_equal(dict(d for n, d in P3.degree(['A', 'B'])), {})
# nbunch can be a graph
assert_equal(sorted(d for n, d in P5.degree(P3)), [1, 2, 2])
# nbunch can be a graph thats way to big
assert_equal(sorted(d for n, d in P3.degree(P5)), [1, 1, 2])
assert_equal(list(P5.degree([])), [])
assert_equal(dict(P5.degree([])), {})
def test_null(self):
null = nx.null_graph()
assert_equal(list(null.degree()), [])
assert_equal(dict(null.degree()), {})
def test_order_size(self):
G = self.G()
G.add_edges_from([('A', 'B'), ('A', 'C'), ('B', 'D'),
('C', 'B'), ('C', 'D')])
assert_equal(G.order(), 4)
assert_equal(G.size(), 5)
assert_equal(G.number_of_edges(), 5)
assert_equal(G.number_of_edges('A', 'B'), 1)
assert_equal(G.number_of_edges('A', 'D'), 0)
def test_copy(self):
G = self.G()
H = G.copy() # copy
assert_equal(H.adj, G.adj)
assert_equal(H.name, G.name)
assert_not_equal(H, G)
def test_subgraph(self):
G = self.G()
G.add_edges_from([('A', 'B'), ('A', 'C'), ('B', 'D'),
('C', 'B'), ('C', 'D')])
SG = G.subgraph(['A', 'B', 'D'])
assert_nodes_equal(list(SG), ['A', 'B', 'D'])
assert_edges_equal(list(SG.edges()), [('A', 'B'), ('B', 'D')])
def test_to_directed(self):
G = self.G()
if not G.is_directed():
G.add_edges_from([('A', 'B'), ('A', 'C'), ('B', 'D'),
('C', 'B'), ('C', 'D')])
DG = G.to_directed()
assert_not_equal(DG, G) # directed copy or copy
assert_true(DG.is_directed())
assert_equal(DG.name, G.name)
assert_equal(DG.adj, G.adj)
assert_equal(sorted(DG.out_edges(list('AB'))),
[('A', 'B'), ('A', 'C'), ('B', 'A'),
('B', 'C'), ('B', 'D')])
DG.remove_edge('A', 'B')
assert_true(DG.has_edge('B', 'A')) # this removes B-A but not A-B
assert_false(DG.has_edge('A', 'B'))
def test_to_undirected(self):
G = self.G()
if G.is_directed():
G.add_edges_from([('A', 'B'), ('A', 'C'), ('B', 'D'),
('C', 'B'), ('C', 'D')])
UG = G.to_undirected() # to_undirected
assert_not_equal(UG, G)
assert_false(UG.is_directed())
assert_true(G.is_directed())
assert_equal(UG.name, G.name)
assert_not_equal(UG.adj, G.adj)
assert_equal(sorted(UG.edges(list('AB'))),
[('A', 'B'), ('A', 'C'), ('B', 'C'), ('B', 'D')])
assert_equal(sorted(UG.edges(['A', 'B'])),
[('A', 'B'), ('A', 'C'), ('B', 'C'), ('B', 'D')])
UG.remove_edge('A', 'B')
assert_false(UG.has_edge('B', 'A'))
assert_false(UG.has_edge('A', 'B'))
def test_neighbors(self):
G = self.G()
G.add_edges_from([('A', 'B'), ('A', 'C'), ('B', 'D'),
('C', 'B'), ('C', 'D')])
G.add_nodes_from('GJK')
assert_equal(sorted(G['A']), ['B', 'C'])
assert_equal(sorted(G.neighbors('A')), ['B', 'C'])
assert_equal(sorted(G.neighbors('A')), ['B', 'C'])
assert_equal(sorted(G.neighbors('G')), [])
assert_raises(nx.NetworkXError, G.neighbors, 'j')
def test_iterators(self):
G = self.G()
G.add_edges_from([('A', 'B'), ('A', 'C'), ('B', 'D'),
('C', 'B'), ('C', 'D')])
G.add_nodes_from('GJK')
assert_equal(sorted(G.nodes()),
['A', 'B', 'C', 'D', 'G', 'J', 'K'])
assert_edges_equal(G.edges(),
[('A', 'B'), ('A', 'C'), ('B', 'D'), ('C', 'B'), ('C', 'D')])
assert_equal(sorted([v for k, v in G.degree()]),
[0, 0, 0, 2, 2, 3, 3])
assert_equal(sorted(G.degree(), key=str),
[('A', 2), ('B', 3), ('C', 3), ('D', 2),
('G', 0), ('J', 0), ('K', 0)])
assert_equal(sorted(G.neighbors('A')), ['B', 'C'])
assert_raises(nx.NetworkXError, G.neighbors, 'X')
G.clear()
assert_equal(nx.number_of_nodes(G), 0)
assert_equal(nx.number_of_edges(G), 0)
def test_null_subgraph(self):
# Subgraph of a null graph is a null graph
nullgraph = nx.null_graph()
G = nx.null_graph()
H = G.subgraph([])
assert_true(nx.is_isomorphic(H, nullgraph))
def test_empty_subgraph(self):
# Subgraph of an empty graph is an empty graph. test 1
nullgraph = nx.null_graph()
E5 = nx.empty_graph(5)
E10 = nx.empty_graph(10)
H = E10.subgraph([])
assert_true(nx.is_isomorphic(H, nullgraph))
H = E10.subgraph([1, 2, 3, 4, 5])
assert_true(nx.is_isomorphic(H, E5))
def test_complete_subgraph(self):
# Subgraph of a complete graph is a complete graph
K1 = nx.complete_graph(1)
K3 = nx.complete_graph(3)
K5 = nx.complete_graph(5)
H = K5.subgraph([1, 2, 3])
assert_true(nx.is_isomorphic(H, K3))
def test_subgraph_nbunch(self):
nullgraph = nx.null_graph()
K1 = nx.complete_graph(1)
K3 = nx.complete_graph(3)
K5 = nx.complete_graph(5)
# Test G.subgraph(nbunch), where nbunch is a single node
H = K5.subgraph(1)
assert_true(nx.is_isomorphic(H, K1))
# Test G.subgraph(nbunch), where nbunch is a set
H = K5.subgraph(set([1]))
assert_true(nx.is_isomorphic(H, K1))
# Test G.subgraph(nbunch), where nbunch is an iterator
H = K5.subgraph(iter(K3))
assert_true(nx.is_isomorphic(H, K3))
# Test G.subgraph(nbunch), where nbunch is another graph
H = K5.subgraph(K3)
assert_true(nx.is_isomorphic(H, K3))
H = K5.subgraph([9])
assert_true(nx.is_isomorphic(H, nullgraph))
def test_node_tuple_issue(self):
H = self.G()
# Test error handling of tuple as a node
assert_raises(nx.NetworkXError, H.remove_node, (1, 2))
H.remove_nodes_from([(1, 2)]) # no error
assert_raises(nx.NetworkXError, H.neighbors, (1, 2))