Repository URL to install this package:
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Version:
2.1 ▾
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import json
from nose.tools import assert_equal, assert_true, raises
import networkx as nx
from networkx.readwrite.json_graph import *
class TestCytoscape:
def test_graph(self):
G = nx.path_graph(4)
H = cytoscape_graph(cytoscape_data(G))
nx.is_isomorphic(G, H)
def test_graph_attributes(self):
G = nx.path_graph(4)
G.add_node(1, color='red')
G.add_edge(1, 2, width=7)
G.graph['foo'] = 'bar'
G.graph[1] = 'one'
G.add_node(3, name="node", id="123")
H = cytoscape_graph(cytoscape_data(G))
assert_equal(H.graph['foo'], 'bar')
assert_equal(H.nodes[1]['color'], 'red')
assert_equal(H[1][2]['width'], 7)
assert_equal(H.nodes[3]['name'], 'node')
assert_equal(H.nodes[3]['id'], '123')
d = json.dumps(cytoscape_data(G))
H = cytoscape_graph(json.loads(d))
assert_equal(H.graph['foo'], 'bar')
assert_equal(H.graph[1], 'one')
assert_equal(H.nodes[1]['color'], 'red')
assert_equal(H[1][2]['width'], 7)
assert_equal(H.nodes[3]['name'], 'node')
assert_equal(H.nodes[3]['id'], '123')
def test_digraph(self):
G = nx.DiGraph()
nx.add_path(G, [1, 2, 3])
H = cytoscape_graph(cytoscape_data(G))
assert_true(H.is_directed())
nx.is_isomorphic(G, H)
def test_multidigraph(self):
G = nx.MultiDiGraph()
nx.add_path(G, [1, 2, 3])
H = cytoscape_graph(cytoscape_data(G))
assert_true(H.is_directed())
assert_true(H.is_multigraph())
def test_multigraph(self):
G = nx.MultiGraph()
G.add_edge(1, 2, key='first')
G.add_edge(1, 2, key='second', color='blue')
H = cytoscape_graph(cytoscape_data(G))
assert_true(nx.is_isomorphic(G, H))
assert_equal(H[1][2]['second']['color'], 'blue')
@raises(nx.NetworkXError)
def test_exception(self):
G = nx.MultiDiGraph()
attrs = dict(name='node', ident='node')
cytoscape_data(G, attrs)