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Version:
3.2.1 ▾
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import math
import pytest
import networkx as nx
class TestKatzCentrality:
def test_K5(self):
"""Katz centrality: K5"""
G = nx.complete_graph(5)
alpha = 0.1
b = nx.katz_centrality(G, alpha)
v = math.sqrt(1 / 5.0)
b_answer = dict.fromkeys(G, v)
for n in sorted(G):
assert b[n] == pytest.approx(b_answer[n], abs=1e-7)
nstart = {n: 1 for n in G}
b = nx.katz_centrality(G, alpha, nstart=nstart)
for n in sorted(G):
assert b[n] == pytest.approx(b_answer[n], abs=1e-7)
def test_P3(self):
"""Katz centrality: P3"""
alpha = 0.1
G = nx.path_graph(3)
b_answer = {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162}
b = nx.katz_centrality(G, alpha)
for n in sorted(G):
assert b[n] == pytest.approx(b_answer[n], abs=1e-4)
def test_maxiter(self):
with pytest.raises(nx.PowerIterationFailedConvergence):
nx.katz_centrality(nx.path_graph(3), 0.1, max_iter=0)
def test_beta_as_scalar(self):
alpha = 0.1
beta = 0.1
b_answer = {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162}
G = nx.path_graph(3)
b = nx.katz_centrality(G, alpha, beta)
for n in sorted(G):
assert b[n] == pytest.approx(b_answer[n], abs=1e-4)
def test_beta_as_dict(self):
alpha = 0.1
beta = {0: 1.0, 1: 1.0, 2: 1.0}
b_answer = {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162}
G = nx.path_graph(3)
b = nx.katz_centrality(G, alpha, beta)
for n in sorted(G):
assert b[n] == pytest.approx(b_answer[n], abs=1e-4)
def test_multiple_alpha(self):
alpha_list = [0.1, 0.2, 0.3, 0.4, 0.5, 0.6]
for alpha in alpha_list:
b_answer = {
0.1: {
0: 0.5598852584152165,
1: 0.6107839182711449,
2: 0.5598852584152162,
},
0.2: {
0: 0.5454545454545454,
1: 0.6363636363636365,
2: 0.5454545454545454,
},
0.3: {
0: 0.5333964609104419,
1: 0.6564879518897746,
2: 0.5333964609104419,
},
0.4: {
0: 0.5232045649263551,
1: 0.6726915834767423,
2: 0.5232045649263551,
},
0.5: {
0: 0.5144957746691622,
1: 0.6859943117075809,
2: 0.5144957746691622,
},
0.6: {
0: 0.5069794004195823,
1: 0.6970966755769258,
2: 0.5069794004195823,
},
}
G = nx.path_graph(3)
b = nx.katz_centrality(G, alpha)
for n in sorted(G):
assert b[n] == pytest.approx(b_answer[alpha][n], abs=1e-4)
def test_multigraph(self):
with pytest.raises(nx.NetworkXException):
nx.katz_centrality(nx.MultiGraph(), 0.1)
def test_empty(self):
e = nx.katz_centrality(nx.Graph(), 0.1)
assert e == {}
def test_bad_beta(self):
with pytest.raises(nx.NetworkXException):
G = nx.Graph([(0, 1)])
beta = {0: 77}
nx.katz_centrality(G, 0.1, beta=beta)
def test_bad_beta_number(self):
with pytest.raises(nx.NetworkXException):
G = nx.Graph([(0, 1)])
nx.katz_centrality(G, 0.1, beta="foo")
class TestKatzCentralityNumpy:
@classmethod
def setup_class(cls):
global np
np = pytest.importorskip("numpy")
pytest.importorskip("scipy")
def test_K5(self):
"""Katz centrality: K5"""
G = nx.complete_graph(5)
alpha = 0.1
b = nx.katz_centrality(G, alpha)
v = math.sqrt(1 / 5.0)
b_answer = dict.fromkeys(G, v)
for n in sorted(G):
assert b[n] == pytest.approx(b_answer[n], abs=1e-7)
b = nx.eigenvector_centrality_numpy(G)
for n in sorted(G):
assert b[n] == pytest.approx(b_answer[n], abs=1e-3)
def test_P3(self):
"""Katz centrality: P3"""
alpha = 0.1
G = nx.path_graph(3)
b_answer = {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162}
b = nx.katz_centrality_numpy(G, alpha)
for n in sorted(G):
assert b[n] == pytest.approx(b_answer[n], abs=1e-4)
def test_beta_as_scalar(self):
alpha = 0.1
beta = 0.1
b_answer = {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162}
G = nx.path_graph(3)
b = nx.katz_centrality_numpy(G, alpha, beta)
for n in sorted(G):
assert b[n] == pytest.approx(b_answer[n], abs=1e-4)
def test_beta_as_dict(self):
alpha = 0.1
beta = {0: 1.0, 1: 1.0, 2: 1.0}
b_answer = {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162}
G = nx.path_graph(3)
b = nx.katz_centrality_numpy(G, alpha, beta)
for n in sorted(G):
assert b[n] == pytest.approx(b_answer[n], abs=1e-4)
def test_multiple_alpha(self):
alpha_list = [0.1, 0.2, 0.3, 0.4, 0.5, 0.6]
for alpha in alpha_list:
b_answer = {
0.1: {
0: 0.5598852584152165,
1: 0.6107839182711449,
2: 0.5598852584152162,
},
0.2: {
0: 0.5454545454545454,
1: 0.6363636363636365,
2: 0.5454545454545454,
},
0.3: {
0: 0.5333964609104419,
1: 0.6564879518897746,
2: 0.5333964609104419,
},
0.4: {
0: 0.5232045649263551,
1: 0.6726915834767423,
2: 0.5232045649263551,
},
0.5: {
0: 0.5144957746691622,
1: 0.6859943117075809,
2: 0.5144957746691622,
},
0.6: {
0: 0.5069794004195823,
1: 0.6970966755769258,
2: 0.5069794004195823,
},
}
G = nx.path_graph(3)
b = nx.katz_centrality_numpy(G, alpha)
for n in sorted(G):
assert b[n] == pytest.approx(b_answer[alpha][n], abs=1e-4)
def test_multigraph(self):
with pytest.raises(nx.NetworkXException):
nx.katz_centrality(nx.MultiGraph(), 0.1)
def test_empty(self):
e = nx.katz_centrality(nx.Graph(), 0.1)
assert e == {}
def test_bad_beta(self):
with pytest.raises(nx.NetworkXException):
G = nx.Graph([(0, 1)])
beta = {0: 77}
nx.katz_centrality_numpy(G, 0.1, beta=beta)
def test_bad_beta_numbe(self):
with pytest.raises(nx.NetworkXException):
G = nx.Graph([(0, 1)])
nx.katz_centrality_numpy(G, 0.1, beta="foo")
def test_K5_unweighted(self):
"""Katz centrality: K5"""
G = nx.complete_graph(5)
alpha = 0.1
b = nx.katz_centrality(G, alpha, weight=None)
v = math.sqrt(1 / 5.0)
b_answer = dict.fromkeys(G, v)
for n in sorted(G):
assert b[n] == pytest.approx(b_answer[n], abs=1e-7)
b = nx.eigenvector_centrality_numpy(G, weight=None)
for n in sorted(G):
assert b[n] == pytest.approx(b_answer[n], abs=1e-3)
def test_P3_unweighted(self):
"""Katz centrality: P3"""
alpha = 0.1
G = nx.path_graph(3)
b_answer = {0: 0.5598852584152165, 1: 0.6107839182711449, 2: 0.5598852584152162}
b = nx.katz_centrality_numpy(G, alpha, weight=None)
for n in sorted(G):
assert b[n] == pytest.approx(b_answer[n], abs=1e-4)
class TestKatzCentralityDirected:
@classmethod
def setup_class(cls):
G = nx.DiGraph()
edges = [
(1, 2),
(1, 3),
(2, 4),
(3, 2),
(3, 5),
(4, 2),
(4, 5),
(4, 6),
(5, 6),
(5, 7),
(5, 8),
(6, 8),
(7, 1),
(7, 5),
(7, 8),
(8, 6),
(8, 7),
]
G.add_edges_from(edges, weight=2.0)
cls.G = G.reverse()
cls.G.alpha = 0.1
cls.G.evc = [
0.3289589783189635,
0.2832077296243516,
0.3425906003685471,
0.3970420865198392,
0.41074871061646284,
0.272257430756461,
0.4201989685435462,
0.34229059218038554,
]
H = nx.DiGraph(edges)
cls.H = G.reverse()
cls.H.alpha = 0.1
cls.H.evc = [
0.3289589783189635,
0.2832077296243516,
0.3425906003685471,
0.3970420865198392,
0.41074871061646284,
0.272257430756461,
0.4201989685435462,
0.34229059218038554,
]
def test_katz_centrality_weighted(self):
G = self.G
alpha = self.G.alpha
p = nx.katz_centrality(G, alpha, weight="weight")
for a, b in zip(list(p.values()), self.G.evc):
assert a == pytest.approx(b, abs=1e-7)
def test_katz_centrality_unweighted(self):
H = self.H
alpha = self.H.alpha
p = nx.katz_centrality(H, alpha, weight="weight")
for a, b in zip(list(p.values()), self.H.evc):
assert a == pytest.approx(b, abs=1e-7)
class TestKatzCentralityDirectedNumpy(TestKatzCentralityDirected):
@classmethod
def setup_class(cls):
global np
np = pytest.importorskip("numpy")
pytest.importorskip("scipy")
super().setup_class()
def test_katz_centrality_weighted(self):
G = self.G
alpha = self.G.alpha
p = nx.katz_centrality_numpy(G, alpha, weight="weight")
for a, b in zip(list(p.values()), self.G.evc):
assert a == pytest.approx(b, abs=1e-7)
def test_katz_centrality_unweighted(self):
H = self.H
alpha = self.H.alpha
p = nx.katz_centrality_numpy(H, alpha, weight="weight")
for a, b in zip(list(p.values()), self.H.evc):
assert a == pytest.approx(b, abs=1e-7)
class TestKatzEigenvectorVKatz:
@classmethod
def setup_class(cls):
global np
np = pytest.importorskip("numpy")
pytest.importorskip("scipy")
def test_eigenvector_v_katz_random(self):
G = nx.gnp_random_graph(10, 0.5, seed=1234)
l = max(np.linalg.eigvals(nx.adjacency_matrix(G).todense()))
e = nx.eigenvector_centrality_numpy(G)
k = nx.katz_centrality_numpy(G, 1.0 / l)
for n in G:
assert e[n] == pytest.approx(k[n], abs=1e-7)