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# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ==============================================================================
"""The InverseGamma distribution class."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import numpy as np
from tensorflow.python.framework import constant_op
from tensorflow.python.framework import dtypes
from tensorflow.python.framework import ops
from tensorflow.python.framework import tensor_shape
from tensorflow.python.ops import array_ops
from tensorflow.python.ops import check_ops
from tensorflow.python.ops import control_flow_ops
from tensorflow.python.ops import math_ops
from tensorflow.python.ops import nn
from tensorflow.python.ops import random_ops
from tensorflow.python.ops.distributions import distribution
from tensorflow.python.ops.distributions import util as distribution_util
from tensorflow.python.util import deprecation
__all__ = [
"InverseGamma",
"InverseGammaWithSoftplusConcentrationRate",
]
class InverseGamma(distribution.Distribution):
"""InverseGamma distribution.
The `InverseGamma` distribution is defined over positive real numbers using
parameters `concentration` (aka "alpha") and `rate` (aka "beta").
#### Mathematical Details
The probability density function (pdf) is,
```none
pdf(x; alpha, beta, x > 0) = x**(-alpha - 1) exp(-beta / x) / Z
Z = Gamma(alpha) beta**-alpha
```
where:
* `concentration = alpha`,
* `rate = beta`,
* `Z` is the normalizing constant, and,
* `Gamma` is the [gamma function](
https://en.wikipedia.org/wiki/Gamma_function).
The cumulative density function (cdf) is,
```none
cdf(x; alpha, beta, x > 0) = GammaInc(alpha, beta / x) / Gamma(alpha)
```
where `GammaInc` is the [upper incomplete Gamma function](
https://en.wikipedia.org/wiki/Incomplete_gamma_function).
The parameters can be intuited via their relationship to mean and stddev,
```none
concentration = alpha = (mean / stddev)**2
rate = beta = mean / stddev**2
```
Distribution parameters are automatically broadcast in all functions; see
examples for details.
WARNING: This distribution may draw 0-valued samples for small concentration
values. See note in `tf.random.gamma` docstring.
#### Examples
```python
import tensorflow_probability as tfp
tfd = tfp.distributions
dist = tfd.InverseGamma(concentration=3.0, rate=2.0)
dist2 = tfd.InverseGamma(concentration=[3.0, 4.0], rate=[2.0, 3.0])
```
"""
@deprecation.deprecated(
"2018-10-01",
"The TensorFlow Distributions library has moved to "
"TensorFlow Probability "
"(https://github.com/tensorflow/probability). You "
"should update all references to use `tfp.distributions` "
"instead of `tf.contrib.distributions`.",
warn_once=True)
def __init__(self,
concentration,
rate,
validate_args=False,
allow_nan_stats=True,
name="InverseGamma"):
"""Construct InverseGamma with `concentration` and `rate` parameters.
The parameters `concentration` and `rate` must be shaped in a way that
supports broadcasting (e.g. `concentration + rate` is a valid operation).
Args:
concentration: Floating point tensor, the concentration params of the
distribution(s). Must contain only positive values.
rate: Floating point tensor, the inverse scale params of the
distribution(s). Must contain only positive values.
validate_args: Python `bool`, default `False`. When `True` distribution
parameters are checked for validity despite possibly degrading runtime
performance. When `False` invalid inputs may silently render incorrect
outputs.
allow_nan_stats: Python `bool`, default `True`. When `True`, statistics
(e.g., mean, mode, variance) use the value "`NaN`" to indicate the
result is undefined. When `False`, an exception is raised if one or
more of the statistic's batch members are undefined.
name: Python `str` name prefixed to Ops created by this class.
Raises:
TypeError: if `concentration` and `rate` are different dtypes.
"""
parameters = dict(locals())
with ops.name_scope(name, values=[concentration, rate]) as name:
with ops.control_dependencies([
check_ops.assert_positive(concentration),
check_ops.assert_positive(rate),
] if validate_args else []):
self._concentration = array_ops.identity(
concentration, name="concentration")
self._rate = array_ops.identity(rate, name="rate")
check_ops.assert_same_float_dtype(
[self._concentration, self._rate])
super(InverseGamma, self).__init__(
dtype=self._concentration.dtype,
validate_args=validate_args,
allow_nan_stats=allow_nan_stats,
reparameterization_type=distribution.NOT_REPARAMETERIZED,
parameters=parameters,
graph_parents=[self._concentration,
self._rate],
name=name)
@staticmethod
def _param_shapes(sample_shape):
return dict(
zip(("concentration", "rate"), ([ops.convert_to_tensor(
sample_shape, dtype=dtypes.int32)] * 2)))
@property
def concentration(self):
"""Concentration parameter."""
return self._concentration
@property
def rate(self):
"""Rate parameter."""
return self._rate
def _batch_shape_tensor(self):
return array_ops.broadcast_dynamic_shape(
array_ops.shape(self.concentration),
array_ops.shape(self.rate))
def _batch_shape(self):
return array_ops.broadcast_static_shape(
self.concentration.get_shape(),
self.rate.get_shape())
def _event_shape_tensor(self):
return constant_op.constant([], dtype=dtypes.int32)
def _event_shape(self):
return tensor_shape.scalar()
@distribution_util.AppendDocstring(
"""Note: See `tf.random.gamma` docstring for sampling details and
caveats.""")
def _sample_n(self, n, seed=None):
return 1. / random_ops.random_gamma(
shape=[n],
alpha=self.concentration,
beta=self.rate,
dtype=self.dtype,
seed=seed)
def _log_prob(self, x):
return self._log_unnormalized_prob(x) - self._log_normalization()
def _cdf(self, x):
x = self._maybe_assert_valid_sample(x)
# Note that igammac returns the upper regularized incomplete gamma
# function Q(a, x), which is what we want for the CDF.
return math_ops.igammac(self.concentration, self.rate / x)
def _log_unnormalized_prob(self, x):
x = self._maybe_assert_valid_sample(x)
return -(1. + self.concentration) * math_ops.log(x) - self.rate / x
def _log_normalization(self):
return (math_ops.lgamma(self.concentration)
- self.concentration * math_ops.log(self.rate))
def _entropy(self):
return (self.concentration
+ math_ops.log(self.rate)
+ math_ops.lgamma(self.concentration)
- ((1. + self.concentration) *
math_ops.digamma(self.concentration)))
@distribution_util.AppendDocstring(
"""The mean of an inverse gamma distribution is
`rate / (concentration - 1)`, when `concentration > 1`, and `NaN`
otherwise. If `self.allow_nan_stats` is `False`, an exception will be
raised rather than returning `NaN`""")
def _mean(self):
mean = self.rate / (self.concentration - 1.)
if self.allow_nan_stats:
nan = array_ops.fill(
self.batch_shape_tensor(),
np.array(np.nan, dtype=self.dtype.as_numpy_dtype()),
name="nan")
return array_ops.where(self.concentration > 1., mean, nan)
else:
return control_flow_ops.with_dependencies([
check_ops.assert_less(
array_ops.ones([], self.dtype), self.concentration,
message="mean undefined when any concentration <= 1"),
], mean)
@distribution_util.AppendDocstring(
"""Variance for inverse gamma is defined only for `concentration > 2`. If
`self.allow_nan_stats` is `False`, an exception will be raised rather
than returning `NaN`.""")
def _variance(self):
var = (
math_ops.square(self.rate) / math_ops.squared_difference(
self.concentration, 1.) / (self.concentration - 2.))
if self.allow_nan_stats:
nan = array_ops.fill(
self.batch_shape_tensor(),
np.array(np.nan, dtype=self.dtype.as_numpy_dtype()),
name="nan")
return array_ops.where(self.concentration > 2., var, nan)
else:
return control_flow_ops.with_dependencies([
check_ops.assert_less(
constant_op.constant(2., dtype=self.dtype),
self.concentration,
message="variance undefined when any concentration <= 2"),
], var)
@distribution_util.AppendDocstring(
"""The mode of an inverse gamma distribution is `rate / (concentration +
1)`.""")
def _mode(self):
return self.rate / (1. + self.concentration)
def _maybe_assert_valid_sample(self, x):
check_ops.assert_same_float_dtype(
tensors=[x], dtype=self.dtype)
if not self.validate_args:
return x
return control_flow_ops.with_dependencies([
check_ops.assert_positive(x),
], x)
class InverseGammaWithSoftplusConcentrationRate(InverseGamma):
"""`InverseGamma` with softplus of `concentration` and `rate`."""
@deprecation.deprecated(
"2018-10-01",
"The TensorFlow Distributions library has moved to "
"TensorFlow Probability "
"(https://github.com/tensorflow/probability). You "
"should update all references to use `tfp.distributions` "
"instead of `tf.contrib.distributions`.",
warn_once=True)
def __init__(self,
concentration,
rate,
validate_args=False,
allow_nan_stats=True,
name="InverseGammaWithSoftplusConcentrationRate"):
parameters = dict(locals())
with ops.name_scope(name, values=[concentration, rate]) as name:
super(InverseGammaWithSoftplusConcentrationRate, self).__init__(
concentration=nn.softplus(concentration,
name="softplus_concentration"),
rate=nn.softplus(rate, name="softplus_rate"),
validate_args=validate_args,
allow_nan_stats=allow_nan_stats,
name=name)
self._parameters = parameters