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aaronreidsmith / pandas   python

Repository URL to install this package:

Version: 0.25.3 

/ tests / io / pytables / test_compat.py

import pytest

import pandas as pd
from pandas.tests.io.pytables.test_pytables import ensure_clean_path
from pandas.util.testing import assert_frame_equal

tables = pytest.importorskip("tables")


@pytest.fixture
def pytables_hdf5_file():
    """Use PyTables to create a simple HDF5 file."""

    table_schema = {
        "c0": tables.Time64Col(pos=0),
        "c1": tables.StringCol(5, pos=1),
        "c2": tables.Int64Col(pos=2),
    }

    t0 = 1561105000.0

    testsamples = [
        {"c0": t0, "c1": "aaaaa", "c2": 1},
        {"c0": t0 + 1, "c1": "bbbbb", "c2": 2},
        {"c0": t0 + 2, "c1": "ccccc", "c2": 10 ** 5},
        {"c0": t0 + 3, "c1": "ddddd", "c2": 4294967295},
    ]

    objname = "pandas_test_timeseries"

    with ensure_clean_path("written_with_pytables.h5") as path:
        # The `ensure_clean_path` context mgr removes the temp file upon exit.
        with tables.open_file(path, mode="w") as f:
            t = f.create_table("/", name=objname, description=table_schema)
            for sample in testsamples:
                for key, value in sample.items():
                    t.row[key] = value
                t.row.append()

        yield path, objname, pd.DataFrame(testsamples)


class TestReadPyTablesHDF5:
    """
    A group of tests which covers reading HDF5 files written by plain PyTables
    (not written by pandas).

    Was introduced for regression-testing issue 11188.
    """

    def test_read_complete(self, pytables_hdf5_file):
        path, objname, df = pytables_hdf5_file
        result = pd.read_hdf(path, key=objname)
        expected = df
        assert_frame_equal(result, expected)

    def test_read_with_start(self, pytables_hdf5_file):
        path, objname, df = pytables_hdf5_file
        # This is a regression test for pandas-dev/pandas/issues/11188
        result = pd.read_hdf(path, key=objname, start=1)
        expected = df[1:].reset_index(drop=True)
        assert_frame_equal(result, expected)

    def test_read_with_stop(self, pytables_hdf5_file):
        path, objname, df = pytables_hdf5_file
        # This is a regression test for pandas-dev/pandas/issues/11188
        result = pd.read_hdf(path, key=objname, stop=1)
        expected = df[:1].reset_index(drop=True)
        assert_frame_equal(result, expected)

    def test_read_with_startstop(self, pytables_hdf5_file):
        path, objname, df = pytables_hdf5_file
        # This is a regression test for pandas-dev/pandas/issues/11188
        result = pd.read_hdf(path, key=objname, start=1, stop=2)
        expected = df[1:2].reset_index(drop=True)
        assert_frame_equal(result, expected)