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agriconnect / numpy   python

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/ lib / polynomial.py

"""
Functions to operate on polynomials.

"""
from __future__ import division, absolute_import, print_function

__all__ = ['poly', 'roots', 'polyint', 'polyder', 'polyadd',
           'polysub', 'polymul', 'polydiv', 'polyval', 'poly1d',
           'polyfit', 'RankWarning']

import functools
import re
import warnings
import numpy.core.numeric as NX

from numpy.core import (isscalar, abs, finfo, atleast_1d, hstack, dot, array,
                        ones)
from numpy.core import overrides
from numpy.core.overrides import set_module
from numpy.lib.twodim_base import diag, vander
from numpy.lib.function_base import trim_zeros
from numpy.lib.type_check import iscomplex, real, imag, mintypecode
from numpy.linalg import eigvals, lstsq, inv


array_function_dispatch = functools.partial(
    overrides.array_function_dispatch, module='numpy')


@set_module('numpy')
class RankWarning(UserWarning):
    """
    Issued by `polyfit` when the Vandermonde matrix is rank deficient.

    For more information, a way to suppress the warning, and an example of
    `RankWarning` being issued, see `polyfit`.

    """
    pass


def _poly_dispatcher(seq_of_zeros):
    return seq_of_zeros


@array_function_dispatch(_poly_dispatcher)
def poly(seq_of_zeros):
    """
    Find the coefficients of a polynomial with the given sequence of roots.

    Returns the coefficients of the polynomial whose leading coefficient
    is one for the given sequence of zeros (multiple roots must be included
    in the sequence as many times as their multiplicity; see Examples).
    A square matrix (or array, which will be treated as a matrix) can also
    be given, in which case the coefficients of the characteristic polynomial
    of the matrix are returned.

    Parameters
    ----------
    seq_of_zeros : array_like, shape (N,) or (N, N)
        A sequence of polynomial roots, or a square array or matrix object.

    Returns
    -------
    c : ndarray
        1D array of polynomial coefficients from highest to lowest degree:

        ``c[0] * x**(N) + c[1] * x**(N-1) + ... + c[N-1] * x + c[N]``
        where c[0] always equals 1.

    Raises
    ------
    ValueError
        If input is the wrong shape (the input must be a 1-D or square
        2-D array).

    See Also
    --------
    polyval : Compute polynomial values.
    roots : Return the roots of a polynomial.
    polyfit : Least squares polynomial fit.
    poly1d : A one-dimensional polynomial class.

    Notes
    -----
    Specifying the roots of a polynomial still leaves one degree of
    freedom, typically represented by an undetermined leading
    coefficient. [1]_ In the case of this function, that coefficient -
    the first one in the returned array - is always taken as one. (If
    for some reason you have one other point, the only automatic way
    presently to leverage that information is to use ``polyfit``.)

    The characteristic polynomial, :math:`p_a(t)`, of an `n`-by-`n`
    matrix **A** is given by

        :math:`p_a(t) = \\mathrm{det}(t\\, \\mathbf{I} - \\mathbf{A})`,

    where **I** is the `n`-by-`n` identity matrix. [2]_

    References
    ----------
    .. [1] M. Sullivan and M. Sullivan, III, "Algebra and Trignometry,
       Enhanced With Graphing Utilities," Prentice-Hall, pg. 318, 1996.

    .. [2] G. Strang, "Linear Algebra and Its Applications, 2nd Edition,"
       Academic Press, pg. 182, 1980.

    Examples
    --------
    Given a sequence of a polynomial's zeros:

    >>> np.poly((0, 0, 0)) # Multiple root example
    array([1, 0, 0, 0])

    The line above represents z**3 + 0*z**2 + 0*z + 0.

    >>> np.poly((-1./2, 0, 1./2))
    array([ 1.  ,  0.  , -0.25,  0.  ])

    The line above represents z**3 - z/4

    >>> np.poly((np.random.random(1.)[0], 0, np.random.random(1.)[0]))
    array([ 1.        , -0.77086955,  0.08618131,  0.        ]) #random

    Given a square array object:

    >>> P = np.array([[0, 1./3], [-1./2, 0]])
    >>> np.poly(P)
    array([ 1.        ,  0.        ,  0.16666667])

    Note how in all cases the leading coefficient is always 1.

    """
    seq_of_zeros = atleast_1d(seq_of_zeros)
    sh = seq_of_zeros.shape

    if len(sh) == 2 and sh[0] == sh[1] and sh[0] != 0:
        seq_of_zeros = eigvals(seq_of_zeros)
    elif len(sh) == 1:
        dt = seq_of_zeros.dtype
        # Let object arrays slip through, e.g. for arbitrary precision
        if dt != object:
            seq_of_zeros = seq_of_zeros.astype(mintypecode(dt.char))
    else:
        raise ValueError("input must be 1d or non-empty square 2d array.")

    if len(seq_of_zeros) == 0:
        return 1.0
    dt = seq_of_zeros.dtype
    a = ones((1,), dtype=dt)
    for k in range(len(seq_of_zeros)):
        a = NX.convolve(a, array([1, -seq_of_zeros[k]], dtype=dt),
                        mode='full')

    if issubclass(a.dtype.type, NX.complexfloating):
        # if complex roots are all complex conjugates, the roots are real.
        roots = NX.asarray(seq_of_zeros, complex)
        if NX.all(NX.sort(roots) == NX.sort(roots.conjugate())):
            a = a.real.copy()

    return a


def _roots_dispatcher(p):
    return p


@array_function_dispatch(_roots_dispatcher)
def roots(p):
    """
    Return the roots of a polynomial with coefficients given in p.

    The values in the rank-1 array `p` are coefficients of a polynomial.
    If the length of `p` is n+1 then the polynomial is described by::

      p[0] * x**n + p[1] * x**(n-1) + ... + p[n-1]*x + p[n]

    Parameters
    ----------
    p : array_like
        Rank-1 array of polynomial coefficients.

    Returns
    -------
    out : ndarray
        An array containing the roots of the polynomial.

    Raises
    ------
    ValueError
        When `p` cannot be converted to a rank-1 array.

    See also
    --------
    poly : Find the coefficients of a polynomial with a given sequence
           of roots.
    polyval : Compute polynomial values.
    polyfit : Least squares polynomial fit.
    poly1d : A one-dimensional polynomial class.

    Notes
    -----
    The algorithm relies on computing the eigenvalues of the
    companion matrix [1]_.

    References
    ----------
    .. [1] R. A. Horn & C. R. Johnson, *Matrix Analysis*.  Cambridge, UK:
        Cambridge University Press, 1999, pp. 146-7.

    Examples
    --------
    >>> coeff = [3.2, 2, 1]
    >>> np.roots(coeff)
    array([-0.3125+0.46351241j, -0.3125-0.46351241j])

    """
    # If input is scalar, this makes it an array
    p = atleast_1d(p)
    if p.ndim != 1:
        raise ValueError("Input must be a rank-1 array.")

    # find non-zero array entries
    non_zero = NX.nonzero(NX.ravel(p))[0]

    # Return an empty array if polynomial is all zeros
    if len(non_zero) == 0:
        return NX.array([])

    # find the number of trailing zeros -- this is the number of roots at 0.
    trailing_zeros = len(p) - non_zero[-1] - 1

    # strip leading and trailing zeros
    p = p[int(non_zero[0]):int(non_zero[-1])+1]

    # casting: if incoming array isn't floating point, make it floating point.
    if not issubclass(p.dtype.type, (NX.floating, NX.complexfloating)):
        p = p.astype(float)

    N = len(p)
    if N > 1:
        # build companion matrix and find its eigenvalues (the roots)
        A = diag(NX.ones((N-2,), p.dtype), -1)
        A[0,:] = -p[1:] / p[0]
        roots = eigvals(A)
    else:
        roots = NX.array([])

    # tack any zeros onto the back of the array
    roots = hstack((roots, NX.zeros(trailing_zeros, roots.dtype)))
    return roots


def _polyint_dispatcher(p, m=None, k=None):
    return (p,)


@array_function_dispatch(_polyint_dispatcher)
def polyint(p, m=1, k=None):
    """
    Return an antiderivative (indefinite integral) of a polynomial.

    The returned order `m` antiderivative `P` of polynomial `p` satisfies
    :math:`\\frac{d^m}{dx^m}P(x) = p(x)` and is defined up to `m - 1`
    integration constants `k`. The constants determine the low-order
    polynomial part

    .. math:: \\frac{k_{m-1}}{0!} x^0 + \\ldots + \\frac{k_0}{(m-1)!}x^{m-1}

    of `P` so that :math:`P^{(j)}(0) = k_{m-j-1}`.

    Parameters
    ----------
    p : array_like or poly1d
        Polynomial to integrate.
        A sequence is interpreted as polynomial coefficients, see `poly1d`.
    m : int, optional
        Order of the antiderivative. (Default: 1)
    k : list of `m` scalars or scalar, optional
        Integration constants. They are given in the order of integration:
        those corresponding to highest-order terms come first.

        If ``None`` (default), all constants are assumed to be zero.
        If `m = 1`, a single scalar can be given instead of a list.

    See Also
    --------
    polyder : derivative of a polynomial
    poly1d.integ : equivalent method

    Examples
    --------
    The defining property of the antiderivative:

    >>> p = np.poly1d([1,1,1])
    >>> P = np.polyint(p)
    >>> P
    poly1d([ 0.33333333,  0.5       ,  1.        ,  0.        ])
    >>> np.polyder(P) == p
    True

    The integration constants default to zero, but can be specified:

    >>> P = np.polyint(p, 3)
    >>> P(0)
    0.0
    >>> np.polyder(P)(0)
    0.0
    >>> np.polyder(P, 2)(0)
    0.0
    >>> P = np.polyint(p, 3, k=[6,5,3])
    >>> P
    poly1d([ 0.01666667,  0.04166667,  0.16666667,  3. ,  5. ,  3. ])

    Note that 3 = 6 / 2!, and that the constants are given in the order of
    integrations. Constant of the highest-order polynomial term comes first:

    >>> np.polyder(P, 2)(0)
    6.0
    >>> np.polyder(P, 1)(0)
    5.0
    >>> P(0)
    3.0

    """
    m = int(m)
    if m < 0:
        raise ValueError("Order of integral must be positive (see polyder)")
    if k is None:
        k = NX.zeros(m, float)
    k = atleast_1d(k)
    if len(k) == 1 and m > 1:
        k = k[0]*NX.ones(m, float)
    if len(k) < m:
        raise ValueError(
              "k must be a scalar or a rank-1 array of length 1 or >m.")

    truepoly = isinstance(p, poly1d)
    p = NX.asarray(p)
    if m == 0:
        if truepoly:
            return poly1d(p)
        return p
    else:
        # Note: this must work also with object and integer arrays
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