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alkaline-ml / joblib   python

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Version: 0.14.1 

/ _parallel_backends.py

"""
Backends for embarrassingly parallel code.
"""

import gc
import os
import sys
import warnings
import threading
import functools
import contextlib
from abc import ABCMeta, abstractmethod

from .format_stack import format_exc
from .my_exceptions import WorkerInterrupt, TransportableException
from ._multiprocessing_helpers import mp
from ._compat import with_metaclass, PY27
if mp is not None:
    from .disk import delete_folder
    from .pool import MemmappingPool
    from multiprocessing.pool import ThreadPool
    from .executor import get_memmapping_executor

    # Compat between concurrent.futures and multiprocessing TimeoutError
    from multiprocessing import TimeoutError
    from .externals.loky._base import TimeoutError as LokyTimeoutError
    from .externals.loky import process_executor, cpu_count


class ParallelBackendBase(with_metaclass(ABCMeta)):
    """Helper abc which defines all methods a ParallelBackend must implement"""

    supports_timeout = False
    supports_inner_max_num_threads = False
    nesting_level = None

    def __init__(self, nesting_level=None, inner_max_num_threads=None):
        self.nesting_level = nesting_level
        self.inner_max_num_threads = inner_max_num_threads

    MAX_NUM_THREADS_VARS = [
        'OMP_NUM_THREADS', 'OPENBLAS_NUM_THREADS', 'MKL_NUM_THREADS',
        'BLIS_NUM_THREADS', 'VECLIB_MAXIMUM_THREADS', 'NUMBA_NUM_THREADS',
        'NUMEXPR_NUM_THREADS',
    ]

    TBB_ENABLE_IPC_VAR = "ENABLE_IPC"

    @abstractmethod
    def effective_n_jobs(self, n_jobs):
        """Determine the number of jobs that can actually run in parallel

        n_jobs is the number of workers requested by the callers. Passing
        n_jobs=-1 means requesting all available workers for instance matching
        the number of CPU cores on the worker host(s).

        This method should return a guesstimate of the number of workers that
        can actually perform work concurrently. The primary use case is to make
        it possible for the caller to know in how many chunks to slice the
        work.

        In general working on larger data chunks is more efficient (less
        scheduling overhead and better use of CPU cache prefetching heuristics)
        as long as all the workers have enough work to do.
        """

    @abstractmethod
    def apply_async(self, func, callback=None):
        """Schedule a func to be run"""

    def configure(self, n_jobs=1, parallel=None, prefer=None, require=None,
                  **backend_args):
        """Reconfigure the backend and return the number of workers.

        This makes it possible to reuse an existing backend instance for
        successive independent calls to Parallel with different parameters.
        """
        self.parallel = parallel
        return self.effective_n_jobs(n_jobs)

    def start_call(self):
        """Call-back method called at the beginning of a Parallel call"""

    def stop_call(self):
        """Call-back method called at the end of a Parallel call"""

    def terminate(self):
        """Shutdown the workers and free the shared memory."""

    def compute_batch_size(self):
        """Determine the optimal batch size"""
        return 1

    def batch_completed(self, batch_size, duration):
        """Callback indicate how long it took to run a batch"""

    def get_exceptions(self):
        """List of exception types to be captured."""
        return []

    def abort_everything(self, ensure_ready=True):
        """Abort any running tasks

        This is called when an exception has been raised when executing a tasks
        and all the remaining tasks will be ignored and can therefore be
        aborted to spare computation resources.

        If ensure_ready is True, the backend should be left in an operating
        state as future tasks might be re-submitted via that same backend
        instance.

        If ensure_ready is False, the implementer of this method can decide
        to leave the backend in a closed / terminated state as no new task
        are expected to be submitted to this backend.

        Setting ensure_ready to False is an optimization that can be leveraged
        when aborting tasks via killing processes from a local process pool
        managed by the backend it-self: if we expect no new tasks, there is no
        point in re-creating new workers.
        """
        # Does nothing by default: to be overridden in subclasses when
        # canceling tasks is possible.
        pass

    def get_nested_backend(self):
        """Backend instance to be used by nested Parallel calls.

        By default a thread-based backend is used for the first level of
        nesting. Beyond, switch to sequential backend to avoid spawning too
        many threads on the host.
        """
        nesting_level = getattr(self, 'nesting_level', 0) + 1
        if nesting_level > 1:
            return SequentialBackend(nesting_level=nesting_level), None
        else:
            return ThreadingBackend(nesting_level=nesting_level), None

    @contextlib.contextmanager
    def retrieval_context(self):
        """Context manager to manage an execution context.

        Calls to Parallel.retrieve will be made inside this context.

        By default, this does nothing. It may be useful for subclasses to
        handle nested parallelism. In particular, it may be required to avoid
        deadlocks if a backend manages a fixed number of workers, when those
        workers may be asked to do nested Parallel calls. Without
        'retrieval_context' this could lead to deadlock, as all the workers
        managed by the backend may be "busy" waiting for the nested parallel
        calls to finish, but the backend has no free workers to execute those
        tasks.
        """
        yield

    def _prepare_worker_env(self, n_jobs):
        """Return environment variables limiting threadpools in external libs.

        This function return a dict containing environment variables to pass
        when creating a pool of process. These environment variables limit the
        number of threads to `n_threads` for OpenMP, MKL, Accelerated and
        OpenBLAS libraries in the child processes.
        """
        explicit_n_threads = self.inner_max_num_threads
        default_n_threads = str(max(cpu_count() // n_jobs, 1))

        # Set the inner environment variables to self.inner_max_num_threads if
        # it is given. Else, default to cpu_count // n_jobs unless the variable
        # is already present in the parent process environment.
        env = {}
        for var in self.MAX_NUM_THREADS_VARS:
            if explicit_n_threads is None:
                var_value = os.environ.get(var, None)
                if var_value is None:
                    var_value = default_n_threads
            else:
                var_value = str(explicit_n_threads)

            env[var] = var_value

        if self.TBB_ENABLE_IPC_VAR not in os.environ:
            # To avoid over-subscription when using TBB, let the TBB schedulers
            # use Inter Process Communication to coordinate:
            env[self.TBB_ENABLE_IPC_VAR] = "1"
        return env

    @staticmethod
    def in_main_thread():
        return isinstance(threading.current_thread(), threading._MainThread)


class SequentialBackend(ParallelBackendBase):
    """A ParallelBackend which will execute all batches sequentially.

    Does not use/create any threading objects, and hence has minimal
    overhead. Used when n_jobs == 1.
    """

    uses_threads = True
    supports_sharedmem = True

    def effective_n_jobs(self, n_jobs):
        """Determine the number of jobs which are going to run in parallel"""
        if n_jobs == 0:
            raise ValueError('n_jobs == 0 in Parallel has no meaning')
        return 1

    def apply_async(self, func, callback=None):
        """Schedule a func to be run"""
        result = ImmediateResult(func)
        if callback:
            callback(result)
        return result

    def get_nested_backend(self):
        # import is not top level to avoid cyclic import errors.
        from .parallel import get_active_backend

        # SequentialBackend should neither change the nesting level, the
        # default backend or the number of jobs. Just return the current one.
        return get_active_backend()


class PoolManagerMixin(object):
    """A helper class for managing pool of workers."""

    _pool = None

    def effective_n_jobs(self, n_jobs):
        """Determine the number of jobs which are going to run in parallel"""
        if n_jobs == 0:
            raise ValueError('n_jobs == 0 in Parallel has no meaning')
        elif mp is None or n_jobs is None:
            # multiprocessing is not available or disabled, fallback
            # to sequential mode
            return 1
        elif n_jobs < 0:
            n_jobs = max(cpu_count() + 1 + n_jobs, 1)
        return n_jobs

    def terminate(self):
        """Shutdown the process or thread pool"""
        if self._pool is not None:
            self._pool.close()
            self._pool.terminate()  # terminate does a join()
            self._pool = None

    def _get_pool(self):
        """Used by apply_async to make it possible to implement lazy init"""
        return self._pool

    def apply_async(self, func, callback=None):
        """Schedule a func to be run"""
        return self._get_pool().apply_async(
            SafeFunction(func), callback=callback)

    def abort_everything(self, ensure_ready=True):
        """Shutdown the pool and restart a new one with the same parameters"""
        self.terminate()
        if ensure_ready:
            self.configure(n_jobs=self.parallel.n_jobs, parallel=self.parallel,
                           **self.parallel._backend_args)


class AutoBatchingMixin(object):
    """A helper class for automagically batching jobs."""

    # In seconds, should be big enough to hide multiprocessing dispatching
    # overhead.
    # This settings was found by running benchmarks/bench_auto_batching.py
    # with various parameters on various platforms.
    MIN_IDEAL_BATCH_DURATION = .2

    # Should not be too high to avoid stragglers: long jobs running alone
    # on a single worker while other workers have no work to process any more.
    MAX_IDEAL_BATCH_DURATION = 2

    # Batching counters default values
    _DEFAULT_EFFECTIVE_BATCH_SIZE = 1
    _DEFAULT_SMOOTHED_BATCH_DURATION = 0.0

    def __init__(self, **kwargs):
        self._effective_batch_size = self._DEFAULT_EFFECTIVE_BATCH_SIZE
        self._smoothed_batch_duration = self._DEFAULT_SMOOTHED_BATCH_DURATION
        super(AutoBatchingMixin, self).__init__(**kwargs)

    def compute_batch_size(self):
        """Determine the optimal batch size"""
        old_batch_size = self._effective_batch_size
        batch_duration = self._smoothed_batch_duration
        if (batch_duration > 0 and
                batch_duration < self.MIN_IDEAL_BATCH_DURATION):
            # The current batch size is too small: the duration of the
            # processing of a batch of task is not large enough to hide
            # the scheduling overhead.
            ideal_batch_size = int(old_batch_size *
                                   self.MIN_IDEAL_BATCH_DURATION /
                                   batch_duration)
            # Multiply by two to limit oscilations between min and max.
            ideal_batch_size *= 2

            # dont increase the batch size too fast to limit huge batch sizes
            # potentially leading to starving worker
            batch_size = min(2 * old_batch_size, ideal_batch_size)

            batch_size = max(batch_size, 1)

            self._effective_batch_size = batch_size
            if self.parallel.verbose >= 10:
                self.parallel._print(
                    "Batch computation too fast (%.4fs.) "
                    "Setting batch_size=%d.", (batch_duration, batch_size))
        elif (batch_duration > self.MAX_IDEAL_BATCH_DURATION and
              old_batch_size >= 2):
            # The current batch size is too big. If we schedule overly long
            # running batches some CPUs might wait with nothing left to do
            # while a couple of CPUs a left processing a few long running
            # batches. Better reduce the batch size a bit to limit the
            # likelihood of scheduling such stragglers.

            # decrease the batch size quickly to limit potential starving
            ideal_batch_size = int(
                old_batch_size * self.MIN_IDEAL_BATCH_DURATION / batch_duration
            )
            # Multiply by two to limit oscilations between min and max.
            batch_size = max(2 * ideal_batch_size, 1)
            self._effective_batch_size = batch_size
            if self.parallel.verbose >= 10:
                self.parallel._print(
                    "Batch computation too slow (%.4fs.) "
                    "Setting batch_size=%d.", (batch_duration, batch_size))
        else:
            # No batch size adjustment
            batch_size = old_batch_size

        if batch_size != old_batch_size:
            # Reset estimation of the smoothed mean batch duration: this
            # estimate is updated in the multiprocessing apply_async
            # CallBack as long as the batch_size is constant. Therefore
            # we need to reset the estimate whenever we re-tune the batch
            # size.
            self._smoothed_batch_duration = \
                self._DEFAULT_SMOOTHED_BATCH_DURATION

        return batch_size
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