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alkaline-ml / scikit-learn   python

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/ cluster / tests / test_feature_agglomeration.py

"""
Tests for sklearn.cluster._feature_agglomeration
"""
# Authors: Sergul Aydore 2017
import numpy as np
from sklearn.cluster import FeatureAgglomeration
from sklearn.utils._testing import assert_no_warnings
from sklearn.utils._testing import assert_array_almost_equal


def test_feature_agglomeration():
    n_clusters = 1
    X = np.array([0, 0, 1]).reshape(1, 3)  # (n_samples, n_features)

    agglo_mean = FeatureAgglomeration(n_clusters=n_clusters,
                                      pooling_func=np.mean)
    agglo_median = FeatureAgglomeration(n_clusters=n_clusters,
                                        pooling_func=np.median)
    assert_no_warnings(agglo_mean.fit, X)
    assert_no_warnings(agglo_median.fit, X)
    assert np.size(np.unique(agglo_mean.labels_)) == n_clusters
    assert np.size(np.unique(agglo_median.labels_)) == n_clusters
    assert np.size(agglo_mean.labels_) == X.shape[1]
    assert np.size(agglo_median.labels_) == X.shape[1]

    # Test transform
    Xt_mean = agglo_mean.transform(X)
    Xt_median = agglo_median.transform(X)
    assert Xt_mean.shape[1] == n_clusters
    assert Xt_median.shape[1] == n_clusters
    assert Xt_mean == np.array([1 / 3.])
    assert Xt_median == np.array([0.])

    # Test inverse transform
    X_full_mean = agglo_mean.inverse_transform(Xt_mean)
    X_full_median = agglo_median.inverse_transform(Xt_median)
    assert np.unique(X_full_mean[0]).size == n_clusters
    assert np.unique(X_full_median[0]).size == n_clusters

    assert_array_almost_equal(agglo_mean.transform(X_full_mean),
                              Xt_mean)
    assert_array_almost_equal(agglo_median.transform(X_full_median),
                              Xt_median)