/*
pybind11/eigen.h: Transparent conversion for dense and sparse Eigen matrices
Copyright (c) 2016 Wenzel Jakob <wenzel.jakob@epfl.ch>
All rights reserved. Use of this source code is governed by a
BSD-style license that can be found in the LICENSE file.
*/
#pragma once
#include "numpy.h"
#if defined(__INTEL_COMPILER)
# pragma warning(disable: 1682) // implicit conversion of a 64-bit integral type to a smaller integral type (potential portability problem)
#elif defined(__GNUG__) || defined(__clang__)
# pragma GCC diagnostic push
# pragma GCC diagnostic ignored "-Wconversion"
# pragma GCC diagnostic ignored "-Wdeprecated-declarations"
# ifdef __clang__
// Eigen generates a bunch of implicit-copy-constructor-is-deprecated warnings with -Wdeprecated
// under Clang, so disable that warning here:
# pragma GCC diagnostic ignored "-Wdeprecated"
# endif
# if __GNUC__ >= 7
# pragma GCC diagnostic ignored "-Wint-in-bool-context"
# endif
#endif
#if defined(_MSC_VER)
# pragma warning(push)
# pragma warning(disable: 4127) // warning C4127: Conditional expression is constant
# pragma warning(disable: 4996) // warning C4996: std::unary_negate is deprecated in C++17
#endif
#include <Eigen/Core>
#include <Eigen/SparseCore>
// Eigen prior to 3.2.7 doesn't have proper move constructors--but worse, some classes get implicit
// move constructors that break things. We could detect this an explicitly copy, but an extra copy
// of matrices seems highly undesirable.
static_assert(EIGEN_VERSION_AT_LEAST(3,2,7), "Eigen support in pybind11 requires Eigen >= 3.2.7");
PYBIND11_NAMESPACE_BEGIN(PYBIND11_NAMESPACE)
// Provide a convenience alias for easier pass-by-ref usage with fully dynamic strides:
using EigenDStride = Eigen::Stride<Eigen::Dynamic, Eigen::Dynamic>;
template <typename MatrixType> using EigenDRef = Eigen::Ref<MatrixType, 0, EigenDStride>;
template <typename MatrixType> using EigenDMap = Eigen::Map<MatrixType, 0, EigenDStride>;
PYBIND11_NAMESPACE_BEGIN(detail)
#if EIGEN_VERSION_AT_LEAST(3,3,0)
using EigenIndex = Eigen::Index;
#else
using EigenIndex = EIGEN_DEFAULT_DENSE_INDEX_TYPE;
#endif
// Matches Eigen::Map, Eigen::Ref, blocks, etc:
template <typename T> using is_eigen_dense_map = all_of<is_template_base_of<Eigen::DenseBase, T>, std::is_base_of<Eigen::MapBase<T, Eigen::ReadOnlyAccessors>, T>>;
template <typename T> using is_eigen_mutable_map = std::is_base_of<Eigen::MapBase<T, Eigen::WriteAccessors>, T>;
template <typename T> using is_eigen_dense_plain = all_of<negation<is_eigen_dense_map<T>>, is_template_base_of<Eigen::PlainObjectBase, T>>;
template <typename T> using is_eigen_sparse = is_template_base_of<Eigen::SparseMatrixBase, T>;
// Test for objects inheriting from EigenBase<Derived> that aren't captured by the above. This
// basically covers anything that can be assigned to a dense matrix but that don't have a typical
// matrix data layout that can be copied from their .data(). For example, DiagonalMatrix and
// SelfAdjointView fall into this category.
template <typename T> using is_eigen_other = all_of<
is_template_base_of<Eigen::EigenBase, T>,
negation<any_of<is_eigen_dense_map<T>, is_eigen_dense_plain<T>, is_eigen_sparse<T>>>
>;
// Captures numpy/eigen conformability status (returned by EigenProps::conformable()):
template <bool EigenRowMajor> struct EigenConformable {
bool conformable = false;
EigenIndex rows = 0, cols = 0;
EigenDStride stride{0, 0}; // Only valid if negativestrides is false!
bool negativestrides = false; // If true, do not use stride!
EigenConformable(bool fits = false) : conformable{fits} {}
// Matrix type:
EigenConformable(EigenIndex r, EigenIndex c,
EigenIndex rstride, EigenIndex cstride) :
conformable{true}, rows{r}, cols{c} {
// TODO: when Eigen bug #747 is fixed, remove the tests for non-negativity. http://eigen.tuxfamily.org/bz/show_bug.cgi?id=747
if (rstride < 0 || cstride < 0) {
negativestrides = true;
} else {
stride = {EigenRowMajor ? rstride : cstride /* outer stride */,
EigenRowMajor ? cstride : rstride /* inner stride */ };
}
}
// Vector type:
EigenConformable(EigenIndex r, EigenIndex c, EigenIndex stride)
: EigenConformable(r, c, r == 1 ? c*stride : stride, c == 1 ? r : r*stride) {}
template <typename props> bool stride_compatible() const {
// To have compatible strides, we need (on both dimensions) one of fully dynamic strides,
// matching strides, or a dimension size of 1 (in which case the stride value is irrelevant)
return
!negativestrides &&
(props::inner_stride == Eigen::Dynamic || props::inner_stride == stride.inner() ||
(EigenRowMajor ? cols : rows) == 1) &&
(props::outer_stride == Eigen::Dynamic || props::outer_stride == stride.outer() ||
(EigenRowMajor ? rows : cols) == 1);
}
operator bool() const { return conformable; }
};
template <typename Type> struct eigen_extract_stride { using type = Type; };
template <typename PlainObjectType, int MapOptions, typename StrideType>
struct eigen_extract_stride<Eigen::Map<PlainObjectType, MapOptions, StrideType>> { using type = StrideType; };
template <typename PlainObjectType, int Options, typename StrideType>
struct eigen_extract_stride<Eigen::Ref<PlainObjectType, Options, StrideType>> { using type = StrideType; };
// Helper struct for extracting information from an Eigen type
template <typename Type_> struct EigenProps {
using Type = Type_;
using Scalar = typename Type::Scalar;
using StrideType = typename eigen_extract_stride<Type>::type;
static constexpr EigenIndex
rows = Type::RowsAtCompileTime,
cols = Type::ColsAtCompileTime,
size = Type::SizeAtCompileTime;
static constexpr bool
row_major = Type::IsRowMajor,
vector = Type::IsVectorAtCompileTime, // At least one dimension has fixed size 1
fixed_rows = rows != Eigen::Dynamic,
fixed_cols = cols != Eigen::Dynamic,
fixed = size != Eigen::Dynamic, // Fully-fixed size
dynamic = !fixed_rows && !fixed_cols; // Fully-dynamic size
template <EigenIndex i, EigenIndex ifzero> using if_zero = std::integral_constant<EigenIndex, i == 0 ? ifzero : i>;
static constexpr EigenIndex inner_stride = if_zero<StrideType::InnerStrideAtCompileTime, 1>::value,
outer_stride = if_zero<StrideType::OuterStrideAtCompileTime,
vector ? size : row_major ? cols : rows>::value;
static constexpr bool dynamic_stride = inner_stride == Eigen::Dynamic && outer_stride == Eigen::Dynamic;
static constexpr bool requires_row_major = !dynamic_stride && !vector && (row_major ? inner_stride : outer_stride) == 1;
static constexpr bool requires_col_major = !dynamic_stride && !vector && (row_major ? outer_stride : inner_stride) == 1;
// Takes an input array and determines whether we can make it fit into the Eigen type. If
// the array is a vector, we attempt to fit it into either an Eigen 1xN or Nx1 vector
// (preferring the latter if it will fit in either, i.e. for a fully dynamic matrix type).
static EigenConformable<row_major> conformable(const array &a) {
const auto dims = a.ndim();
if (dims < 1 || dims > 2)
return false;
if (dims == 2) { // Matrix type: require exact match (or dynamic)
EigenIndex
np_rows = a.shape(0),
np_cols = a.shape(1),
np_rstride = a.strides(0) / static_cast<ssize_t>(sizeof(Scalar)),
np_cstride = a.strides(1) / static_cast<ssize_t>(sizeof(Scalar));
if ((fixed_rows && np_rows != rows) || (fixed_cols && np_cols != cols))
return false;
return {np_rows, np_cols, np_rstride, np_cstride};
}
// Otherwise we're storing an n-vector. Only one of the strides will be used, but whichever
// is used, we want the (single) numpy stride value.
const EigenIndex n = a.shape(0),
stride = a.strides(0) / static_cast<ssize_t>(sizeof(Scalar));
if (vector) { // Eigen type is a compile-time vector
if (fixed && size != n)
return false; // Vector size mismatch
return {rows == 1 ? 1 : n, cols == 1 ? 1 : n, stride};
}
else if (fixed) {
// The type has a fixed size, but is not a vector: abort
return false;
}
else if (fixed_cols) {
// Since this isn't a vector, cols must be != 1. We allow this only if it exactly
// equals the number of elements (rows is Dynamic, and so 1 row is allowed).
if (cols != n) return false;
return {1, n, stride};
}
else {
// Otherwise it's either fully dynamic, or column dynamic; both become a column vector
if (fixed_rows && rows != n) return false;
return {n, 1, stride};
}
}
static constexpr bool show_writeable = is_eigen_dense_map<Type>::value && is_eigen_mutable_map<Type>::value;
static constexpr bool show_order = is_eigen_dense_map<Type>::value;
static constexpr bool show_c_contiguous = show_order && requires_row_major;
static constexpr bool show_f_contiguous = !show_c_contiguous && show_order && requires_col_major;
static constexpr auto descriptor =
_("numpy.ndarray[") + npy_format_descriptor<Scalar>::name +
_("[") + _<fixed_rows>(_<(size_t) rows>(), _("m")) +
_(", ") + _<fixed_cols>(_<(size_t) cols>(), _("n")) +
_("]") +
// For a reference type (e.g. Ref<MatrixXd>) we have other constraints that might need to be
// satisfied: writeable=True (for a mutable reference), and, depending on the map's stride
// options, possibly f_contiguous or c_contiguous. We include them in the descriptor output
// to provide some hint as to why a TypeError is occurring (otherwise it can be confusing to
// see that a function accepts a 'numpy.ndarray[float64[3,2]]' and an error message that you
// *gave* a numpy.ndarray of the right type and dimensions.
_<show_writeable>(", flags.writeable", "") +
_<show_c_contiguous>(", flags.c_contiguous", "") +
_<show_f_contiguous>(", flags.f_contiguous", "") +
_("]");
};
// Casts an Eigen type to numpy array. If given a base, the numpy array references the src data,
// otherwise it'll make a copy. writeable lets you turn off the writeable flag for the array.
template <typename props> handle eigen_array_cast(typename props::Type const &src, handle base = handle(), bool writeable = true) {
constexpr ssize_t elem_size = sizeof(typename props::Scalar);
array a;
if (props::vector)
a = array({ src.size() }, { elem_size * src.innerStride() }, src.data(), base);
else
a = array({ src.rows(), src.cols() }, { elem_size * src.rowStride(), elem_size * src.colStride() },
src.data(), base);
if (!writeable)
array_proxy(a.ptr())->flags &= ~detail::npy_api::NPY_ARRAY_WRITEABLE_;
return a.release();
}
// Takes an lvalue ref to some Eigen type and a (python) base object, creating a numpy array that
// reference the Eigen object's data with `base` as the python-registered base class (if omitted,
// the base will be set to None, and lifetime management is up to the caller). The numpy array is
// non-writeable if the given type is const.
template <typename props, typename Type>
handle eigen_ref_array(Type &src, handle parent = none()) {
// none here is to get past array's should-we-copy detection, which currently always
// copies when there is no base. Setting the base to None should be harmless.
return eigen_array_cast<props>(src, parent, !std::is_const<Type>::value);
}
// Takes a pointer to some dense, plain Eigen type, builds a capsule around it, then returns a numpy
// array that references the encapsulated data with a python-side reference to the capsule to tie
// its destruction to that of any dependent python objects. Const-ness is determined by whether or
// not the Type of the pointer given is const.
template <typename props, typename Type, typename = enable_if_t<is_eigen_dense_plain<Type>::value>>
handle eigen_encapsulate(Type *src) {
capsule base(src, [](void *o) { delete static_cast<Type *>(o); });
return eigen_ref_array<props>(*src, base);
}
// Type caster for regular, dense matrix types (e.g. MatrixXd), but not maps/refs/etc. of dense
// types.
template<typename Type>
struct type_caster<Type, enable_if_t<is_eigen_dense_plain<Type>::value>> {
using Scalar = typename Type::Scalar;
using props = EigenProps<Type>;
bool load(handle src, bool convert) {
// If we're in no-convert mode, only load if given an array of the correct type
if (!convert && !isinstance<array_t<Scalar>>(src))
return false;
// Coerce into an array, but don't do type conversion yet; the copy below handles it.
auto buf = array::ensure(src);
if (!buf)
return false;
auto dims = buf.ndim();
if (dims < 1 || dims > 2)
return false;
auto fits = props::conformable(buf);
if (!fits)
return false;
// Allocate the new type, then build a numpy reference into it
value = Type(fits.rows, fits.cols);
auto ref = reinterpret_steal<array>(eigen_ref_array<props>(value));
if (dims == 1) ref = ref.squeeze();
else if (ref.ndim() == 1) buf = buf.squeeze();
int result = detail::npy_api::get().PyArray_CopyInto_(ref.ptr(), buf.ptr());
if (result < 0) { // Copy failed!
PyErr_Clear();
return false;
}
return true;
}
private:
// Cast implementation
template <typename CType>
static handle cast_impl(CType *src, return_value_policy policy, handle parent) {
switch (policy) {
case return_value_policy::take_ownership:
case return_value_policy::automatic:
return eigen_encapsulate<props>(src);
case return_value_policy::move:
return eigen_encapsulate<props>(new CType(std::move(*src)));
case return_value_policy::copy:
return eigen_array_cast<props>(*src);
case return_value_policy::reference:
case return_value_policy::automatic_reference:
return eigen_ref_array<props>(*src);
case return_value_policy::reference_internal:
return eigen_ref_array<props>(*src, parent);
default:
throw cast_error("unhandled return_value_policy: should not happen!");
};
}
public:
// Normal returned non-reference, non-const value:
static handle cast(Type &&src, return_value_policy /* policy */, handle parent) {
return cast_impl(&src, return_value_policy::move, parent);
}
// If you return a non-reference const, we mark the numpy array readonly:
static handle cast(const Type &&src, return_value_policy /* policy */, handle parent) {
return cast_impl(&src, return_value_policy::move, parent);
}
// lvalue reference return; default (automatic) becomes copy
static handle cast(Type &src, return_value_policy policy, handle parent) {
if (policy == return_value_policy::automatic || policy == return_value_policy::automatic_reference)
policy = return_value_policy::copy;
return cast_impl(&src, policy, parent);
}
// const lvalue reference return; default (automatic) becomes copy
static handle cast(const Type &src, return_value_policy policy, handle parent) {
if (policy == return_value_policy::automatic || policy == return_value_policy::automatic_reference)
policy = return_value_policy::copy;
return cast(&src, policy, parent);
}
// non-const pointer return
static handle cast(Type *src, return_value_policy policy, handle parent) {
return cast_impl(src, policy, parent);
}
// const pointer return
static handle cast(const Type *src, return_value_policy policy, handle parent) {
return cast_impl(src, policy, parent);
}
static constexpr auto name = props::descriptor;
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