Learn more  » Push, build, and install  RubyGems npm packages Python packages Maven artifacts PHP packages Go Modules Bower components Debian packages RPM packages NuGet packages

stream / scikit-learn   python

Repository URL to install this package:

/ cluster / tests / test_affinity_propagation.py

"""
Testing for Clustering methods

"""

import numpy as np

from sklearn.utils.testing import assert_equal
from sklearn.utils.testing import assert_array_equal
from sklearn.utils.testing import assert_raises

from sklearn.cluster.affinity_propagation_ import AffinityPropagation
from sklearn.cluster.affinity_propagation_ import affinity_propagation
from sklearn.datasets.samples_generator import make_blobs
from sklearn.metrics import euclidean_distances

n_clusters = 3
centers = np.array([[1, 1], [-1, -1], [1, -1]]) + 10
X, _ = make_blobs(n_samples=60, n_features=2, centers=centers,
                  cluster_std=0.4, shuffle=True, random_state=0)


def test_affinity_propagation():
    # Affinity Propagation algorithm
    # Compute similarities
    S = -euclidean_distances(X, squared=True)
    preference = np.median(S) * 10
    # Compute Affinity Propagation
    cluster_centers_indices, labels = affinity_propagation(
        S, preference=preference)

    n_clusters_ = len(cluster_centers_indices)

    assert_equal(n_clusters, n_clusters_)

    af = AffinityPropagation(preference=preference, affinity="precomputed")
    labels_precomputed = af.fit(S).labels_

    af = AffinityPropagation(preference=preference, verbose=True)
    labels = af.fit(X).labels_

    assert_array_equal(labels, labels_precomputed)

    cluster_centers_indices = af.cluster_centers_indices_

    n_clusters_ = len(cluster_centers_indices)
    assert_equal(np.unique(labels).size, n_clusters_)
    assert_equal(n_clusters, n_clusters_)

    # Test also with no copy
    _, labels_no_copy = affinity_propagation(S, preference=preference,
                                             copy=False)
    assert_array_equal(labels, labels_no_copy)

    # Test input validation
    assert_raises(ValueError, affinity_propagation, S[:, :-1])
    assert_raises(ValueError, affinity_propagation, S, damping=0)
    af = AffinityPropagation(affinity="unknown")
    assert_raises(ValueError, af.fit, X)


def test_affinity_propagation_predict():
    # Test AffinityPropagation.predict
    af = AffinityPropagation(affinity="euclidean")
    labels = af.fit_predict(X)
    labels2 = af.predict(X)
    assert_array_equal(labels, labels2)


def test_affinity_propagation_predict_error():
    # Test exception in AffinityPropagation.predict
    # Not fitted.
    af = AffinityPropagation(affinity="euclidean")
    assert_raises(ValueError, af.predict, X)

    # Predict not supported when affinity="precomputed".
    S = np.dot(X, X.T)
    af = AffinityPropagation(affinity="precomputed")
    af.fit(S)
    assert_raises(ValueError, af.predict, X)